Bartek Wilczynski: search on Z-Library

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1

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development

Zinzen, Robert P, Girardot, Charles, Gustafson, E Hilary, Perez-Gonzalez, Alexis, Delhomme, Nicolas, Ghavi-Helm, Yad, Wilczyński, Bartek, Riddell, Andrew, Furlong, Eileen E M, Bonn, Stefan

Journal:

Nature Genetics

Year:

2012

Language:

english

File:

PDF, 2.26 MB

english, 2012

2

Finding evolutionarily conserved cis-regulatory modules with a universal set of motifs

Bartek Wilczynski, Norbert Dojer, Mateusz Patelak, Jerzy Tiuryn

Journal:

BMC Bioinformatics

Year:

2009

Language:

english

File:

PDF, 685 KB

english, 2009

3

Applying dynamic Bayesian networks to perturbed gene expression data

Norbert Dojer, Anna Gambin, Andrzej Mizera, Bartek Wilczyński, Jerzy Tiuryn

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 660 KB

english, 2006

4

Using local gene expression similarities to discover regulatory binding site modules

Bartek Wilczyński, Torgeir R Hvidsten, Andriy Kryshtafovych, Jerzy Tiuryn, Jan Komorowski, Krzysztof Fidelis

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 687 KB

english, 2006

5

Challenges for modeling global gene regulatory networks during development: Insights from Drosophila

Bartek Wilczynski, Eileen E.M. Furlong

Journal:

Developmental Biology

Year:

2010

Language:

english

File:

PDF, 537 KB

english, 2010

6

Active enhancer positions can be accurately predicted from chromatin marks and collective sequence motif data

Podsiadło, Agnieszka, Wrzesień, Mariusz, Paja, Wiesław, Rudnicki, Witold, Wilczyński, Bartek

Journal:

BMC Systems Biology

Year:

2013

Language:

english

File:

PDF, 301 KB

english, 2013

7

Supervised learning method for predicting chromatin boundary associated insulator elements

Bednarz, Paweł, Wilczyński, Bartek

Journal:

Journal of Bioinformatics and Computational Biology

Year:

2014

Language:

english

File:

PDF, 4.53 MB

english, 2014

8

Predicting Spatial and Temporal Gene Expression Using an Integrative Model of Transcription Factor Occupancy and Chromatin State

Wilczynski, Bartek, Liu, Ya-Hsin, Yeo, Zhen Xuan, Furlong, Eileen E. M., Segal, Eran

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 930 KB

english, 2012

9

Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP-seq data

Dabrowski, Michal, Dojer, Norbert, Krystkowiak, Izabella, Kaminska, Bozena, Wilczynski, Bartek

Journal:

BMC Bioinformatics

Year:

2015

Language:

english

File:

PDF, 2.41 MB

english, 2015

10

Genome-Wide Analysis of Drosophila RBf2 Protein Highlights the Diversity of RB Family Targets and Possible Role in Regulation of Ribosome Biosynthesis

Wei, Yiliang, Mondal, Shamba S., Mouawad, Rima, Wilczyński, Bartek, Henry, R. William, Arnosti, David N.

Journal:

G3 Genes|Genome|Genetics

Year:

2015

Language:

english

File:

PDF, 2.77 MB

english, 2015

11

WeBIAS: a web server for publishing bioinformatics applications

Daniluk, Paweł, Wilczyński, Bartek, Lesyng, Bogdan

Journal:

BMC Research Notes

Year:

2015

Language:

english

File:

PDF, 1.17 MB

english, 2015

12

FastBill: An Improved Tool for Prediction of Cis-Regulatory Modules

Wilczynski, Bartek, Tiuryn, Jerzy

Journal:

Journal of Computational Biology

Year:

2016

Language:

english

File:

PDF, 376 KB

english, 2016

13

Arabidopsis SWI/SNF chromatin remodeling complex binds both promoters and terminators to regulate gene expression

Archacki, Rafal, Yatusevich, Ruslan, Buszewicz, Daniel, Krzyczmonik, Katarzyna, Patryn, Jacek, Iwanicka-Nowicka, Roksana, Biecek, Przemyslaw, Wilczynski, Bartek, Koblowska, Marta, Jerzmanowski, Andrze

Journal:

Nucleic Acids Research

Year:

2016

Language:

english

File:

PDF, 4.70 MB

english, 2016

14

Potential Protective Role of Grainyhead-like Genes in the Development of Clear Cell Renal Cell Carcinoma

Pawlak, Magdalena, Kikulska, Agnieszka, Wrzesinski, Tomasz, Rausch, Tobias, Kwias, Zbigniew, Wilczynski, Bartek, Benes, Vladimir, Wesoly, Joanna, Wilanowski, Tomasz

Journal:

Molecular Carcinogenesis

Year:

2017

Language:

english

File:

PDF, 919 KB

english, 2017

15

Taking promoters out of enhancers in sequence based predictions of tissue-specific mammalian enhancers

Julia Herman-Izycka,Michal Wlasnowolski,Bartek Wilczynski

Journal:

BMC Medical Genomics

Year:

2017

Language:

english

File:

PDF, 1.30 MB

english, 2017

16

Dynamic CRM occupancy reflects a temporal map of developmental progression

Wilczyński, Bartek, Furlong, Eileen E M

Journal:

Molecular Systems Biology

Year:

2010

Language:

english

File:

PDF, 1.40 MB

english, 2010

17

Endothelial cell differentiation is encompassed by changes in long range interactions between inactive chromatin regions

Niskanen, Henri, Tuszynska, Irina, Zaborowski, Rafal, Heinäniemi, Merja, Ylä-Herttuala, Seppo, Wilczynski, Bartek, Kaikkonen, Minna U.

Journal:

Nucleic Acids Research

Year:

2017

Language:

english

File:

PDF, 7.21 MB

english, 2017

18

Coordinated expression and genetic polymorphisms in Grainyhead-like genes in human non-melanoma skin cancers

Kikulska, Agnieszka, Rausch, Tobias, Krzywinska, Ewa, Pawlak, Magdalena, Wilczynski, Bartek, Benes, Vladimir, Rutkowski, Piotr, Wilanowski, Tomasz

Journal:

Year:

2018

Language:

english

File:

PDF, 806 KB

english, 2018

19

RECORD: Reference-Assisted Genome Assembly for Closely Related Genomes

Buza, Krisztian, Wilczynski, Bartek, Dojer, Norbert

Journal:

International Journal of Genomics

Year:

2015

Language:

english

File:

PDF, 1.66 MB

english, 2015

20

BPscore: An Effective Metric for Meaningful Comparisons of Structural Chromosome Segmentations

Zaborowski, Rafał, Wilczyński, Bartek

Journal:

Journal of Computational Biology

Year:

2019

Language:

english

File:

PDF, 411 KB

english, 2019

21

QChromosomeVisualizer: A new tool for 3D visualization of long simulations of polymer-like chromosome models

Zawalski, Bartłomiej, Tuszyńska, Irina, Wilczyński, Bartek

Journal:

Year:

2019

Language:

english

File:

PDF, 1.66 MB

english, 2019

22

MEMOFinder: combining de novo motif prediction methods with a database of known motifs

Wilczynski, Bartek, Darzynkiewicz, Milosz, Tiuryn, Jerzy

Journal:

Nature Precedings

Year:

2008

Language:

english

File:

PDF, 235 KB

english, 2008

23

MEMOFinder: combining de novo motif prediction methods with a database of known motifs

Wilczynski, Bartek, Darzynkiewicz, Milosz, Tiuryn, Jerzy

Journal:

Nature Precedings

Year:

2008

Language:

english

File:

PDF, 235 KB

english, 2008

24

MEMOFinder: combining de novo motif prediction methods with a database of known motifs

Wilczynski, Bartek, Darzynkiewicz, Milosz, Tiuryn, Jerzy

Journal:

Nature Precedings

Year:

2008

File:

PDF, 235 KB

2008

25

MEMOFinder: combining de novo motif prediction methods with a database of known motifs

Wilczynski, Bartek, Darzynkiewicz, Milosz, Tiuryn, Jerzy

Journal:

Nature Precedings

Year:

2008

File:

PDF, 235 KB

2008

26

Automated Inference of Gene Regulatory Networks Using Explicit Regulatory Modules

Réda, Clémence, Wilczyński, Bartek

Journal:

Journal of Theoretical Biology

Year:

2019

Language:

english

File:

PDF, 2.89 MB

english, 2019

27

Automated Inference of Gene Regulatory Networks Using Explicit Regulatory Modules

Réda, Clémence, Wilczyński, Bartek

Journal:

Journal of Theoretical Biology

Year:

2019

File:

PDF, 2.89 MB

2019